Transcript: SRRM2-AS1:7

Basic information

LNCipedia transcript ID: SRRM2-AS1:7 
LNCipedia gene ID: SRRM2-AS1
RefSeq ID: NR_027274
Location (hg38): chr16:2737076-2744797
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1371 bp
Exons: 6
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00024233; NONHSAT147837; NR_027274; NR_027274.1
Alternative gene names: XLOC_011855; linc-PRSS27; ; SRRM2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.9914 non-coding 
CPAT coding probability 39.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SRRM2-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC092117.1-1:2
3.1 lnc-AC092117.1-1:5
4.0 SRRM2-AS1:7
4.1 SRRM2-AS1:7
5.0 SRRM2-AS1:7
5.1 SRRM2-AS1:7
5.2 SRRM2-AS1:7