Transcript: SRGAP2-AS1:5

Basic information

LNCipedia transcript ID: SRGAP2-AS1:5 
HGNC Gene Symbol: SRGAP2-AS1    
HGNC Full Gene Name: SRGAP2 antisense RNA 1
Ensembl Gene ID: ENSG00000230806
Ensembl Transcript ID: ENST00000437515
RefSeq ID: NR_104189
Location (hg38): chr1:121360156-121397905
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2504 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000437515; ENST00000437515.1; AL358175.1-002; OTTHUMT00000098477.2; NONHSAT005602; NR_104189; NR_104189.1
Alternative gene names: ENSG00000230806; AL358175.1; ENSG00000230806.1; OTTHUMG00000013093.3; RP11-343N15.1; SRGAP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.1206 non-coding 
CPAT coding probability 8.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP2-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FCGR1B-2:2
3.1 lnc-FCGR1B-3:2
4.0 lnc-FCGR1B-3:2
4.1 lnc-FCGR1B-3:2
5.0 lnc-FCGR1B-3:2
5.1 SRGAP2-AS1:3
5.2 SRGAP2-AS1:5