Transcript: SRGAP2-AS1:4

Basic information

LNCipedia transcript ID: SRGAP2-AS1:4 
HGNC Gene Symbol: SRGAP2-AS1    
HGNC Full Gene Name: SRGAP2 antisense RNA 1
Ensembl Gene ID: ENSG00000230806
Ensembl Transcript ID: ENST00000429055
Location (hg38): chr1:121397478-121398806
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429055; ENST00000429055.1; AL358175.1-001; OTTHUMT00000036740.1; NONHSAT005610
Alternative gene names: ENSG00000230806; AL358175.1; ENSG00000230806.1; OTTHUMG00000013093.3; RP11-343N15.1; SRGAP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.8608 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP2-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FCGR1B-2:1
3.1 lnc-FCGR1B-3:1
4.0 lnc-FCGR1B-3:1
4.1 lnc-FCGR1B-3:1
5.0 lnc-FCGR1B-3:1
5.1 SRGAP2-AS1:2
5.2 SRGAP2-AS1:4