Transcript: SPATA41:17

Basic information

LNCipedia transcript ID: SPATA41:17 
LNCipedia gene ID: SPATA41
Location (hg38): chr15:100348782-100350181
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1186 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000189419.5|FTMT25700017646.1
Alternative gene names: FLJ42289; HSD47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -138.5548 non-coding 
CPAT coding probability 99.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SPATA41:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SPATA41:17
5.0 SPATA41:17
5.1 SPATA41:17
5.2 SPATA41:17