Transcript: SPATA41:11

Basic information

LNCipedia transcript ID: SPATA41:11 
LNCipedia gene ID: SPATA41
Location (hg38): chr15:100344216-100350766
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6551 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000189419.5|ENCT00000152962.1
Alternative gene names: FLJ42289; HSD47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.8974 non-coding 
CPAT coding probability 98.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SPATA41:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SPATA41:11
5.0 SPATA41:11
5.1 SPATA41:11
5.2 SPATA41:11