Transcript: SNHG7:6

Basic information

LNCipedia transcript ID: SNHG7:6 
LNCipedia gene ID: SNHG7
RefSeq ID: NR_024543
Location (hg38): chr9:136724594-136728184
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 853 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT135577; NR_024543; NR_024543.1
Alternative gene names: MGC16037; NCRNA00061; SNHG7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.8234 non-coding 
CPAT coding probability 7.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG7:6 no no no no

Available literature

  1. She (2016), lncRNA-SNHG7 promotes the proliferation, migration and invasion and inhibits apoptosis of lung cancer cells by enhancing the FAIM2 expression., Oncol. Rep.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCN6-1:7
4.0 SNHG7:6
4.1 SNHG7:6
5.0 SNHG7:6
5.1 SNHG7:6
5.2 SNHG7:6