Transcript: SNHG25:3

Basic information

LNCipedia transcript ID: SNHG25:3 
HGNC Gene Symbol: SNHG25    
HGNC Full Gene Name: small nucleolar RNA host gene 25
Ensembl Gene ID: ENSG00000266402
Ensembl Transcript ID: ENST00000582965
Location (hg38): chr17:64145970-64146476
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 278 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582965.1; RP11-329L6.1-001; OTTHUMT00000443742.1
Alternative gene names: ENSG00000266402.1; RP11-329L6.1; OTTHUMG00000178880.1; ENSG00000266402.2; SNORA76; ENSG00000266402.3; SNHG25;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.9286 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG25:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf72-1:2
4.0 SNHG25:3
4.1 SNHG25:3
5.0 SNHG25:3
5.1 SNHG25:3
5.2 SNHG25:3