Transcript: SNHG17:26

Basic information

LNCipedia transcript ID: SNHG17:26 
LNCipedia gene ID: SNHG17
Ensembl Gene ID: ENSG00000224635
Ensembl Transcript ID: ENST00000422519
Location (hg38): chr20:38406011-38416797
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2004 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422519; ENST00000422519.1; RP4-564F22.5-001; OTTHUMT00000079172.1; NONHSAT079651
Alternative gene names: ENSG00000224635; RP4-564F22.5; ENSG00000224635.1; OTTHUMG00000032445.1; ; AL391095.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6723 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:26 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-1:2
3.1 lnc-KIAA1755-2:1
4.0 SNHG17:26
4.1 SNHG17:26
5.0 SNHG17:26
5.1 SNHG17:26
5.2 SNHG17:26