Transcript: SNHG12:6

Basic information

LNCipedia transcript ID: SNHG12:6 
LNCipedia gene ID: SNHG12
RefSeq ID: NR_024127
Location (hg38): chr1:28578538-28581854
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 739 bp
Exons: 6
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT001967; NR_024127; NR_024127.1
Alternative gene names: PNAS-123; LINC00100; ASLNC04080; SNHG12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -73.9521 non-coding 
CPAT coding probability 2.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG12:6 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Ruan (2016), Long non-coding RNA small nucleolar RNA host gene 12 (SNHG12) promotes cell proliferation and migration by upregulating angiomotin gene expression in human osteosarcoma cells., Tumour Biol.
  3. Zhai (2015), Microarray expression profile of lncRNAs and the upregulated ASLNC04080 lncRNA in human endometrial carcinoma., Int. J. Oncol.
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF12-1:14
4.0 SNHG12:6
4.1 SNHG12:6
5.0 SNHG12:6
5.1 SNHG12:6
5.2 SNHG12:6