Transcript: SNAP47-AS1:2

Basic information

LNCipedia transcript ID: SNAP47-AS1:2 
HGNC Gene Symbol: SNAP47-AS1    
HGNC Full Gene Name: SNAP47 antisense RNA 1
Ensembl Gene ID: ENSG00000230005
Ensembl Transcript ID: ENST00000413347
Location (hg38): chr1:227743831-227747191
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1708 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT009947; ENST00000413347.2
Alternative gene names: ENSG00000230005.2; SNAP47-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.1672 non-coding 
CPAT coding probability 13.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP47-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JMJD4-1:2
4.0 SNAP47-AS1:2
4.1 SNAP47-AS1:2
5.0 SNAP47-AS1:2
5.1 SNAP47-AS1:2
5.2 SNAP47-AS1:2