Transcript: SNAP25-AS1:13

Basic information

LNCipedia transcript ID: SNAP25-AS1:13 
LNCipedia gene ID: SNAP25-AS1
Location (hg38): chr20:10021972-10026651
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 599 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT078570; ENST00000603245.1
Alternative gene names: ENSG00000227906.3; SNAP25-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.2973 non-coding 
CPAT coding probability 3.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAP25-AS1:13 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MKKS-3:12
4.0 SNAP25-AS1:13
4.1 SNAP25-AS1:13
5.0 SNAP25-AS1:13
5.1 SNAP25-AS1:13
5.2 SNAP25-AS1:13