Transcript: SNAI3-AS1:19

Basic information

LNCipedia transcript ID: SNAI3-AS1:19 
LNCipedia gene ID: SNAI3-AS1
Location (hg38): chr16:88663365-88675164
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2096 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260630.2|ENST00000563475.1
Alternative gene names: MGC23284


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.5902 non-coding 
CPAT coding probability 2.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNAI3-AS1:19 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SNAI3-AS1:19
5.0 SNAI3-AS1:19
5.1 SNAI3-AS1:19
5.2 SNAI3-AS1:19