Transcript: SMIM15-AS1:24

Basic information

LNCipedia transcript ID: SMIM15-AS1:24 
LNCipedia gene ID: SMIM15-AS1
RefSeq ID: NR_109908
Location (hg38): chr5:61162316-61232080
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 590 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109908; NR_109908.1
Alternative gene names: CTC-436P18.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2834 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SMIM15-AS1:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDUFAF2-2:2
4.0 lnc-NDUFAF2-2:2
4.1 lnc-NDUFAF2-2:2
5.0 lnc-NDUFAF2-2:2
5.1 SMIM15-AS1:8
5.2 SMIM15-AS1:24