Transcript: SLC8A1-AS1:39

Basic information

LNCipedia transcript ID: SLC8A1-AS1:39 
HGNC Gene Symbol: SLC8A1-AS1    
HGNC Full Gene Name: SLC8A1 antisense RNA 1
Ensembl Gene ID: ENSG00000227028
Ensembl Transcript ID: ENST00000413479
Location (hg38): chr2:40220143-40254763
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 800 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413479.1; AC007254.3-005; OTTHUMT00000325838.1; NONHSAT070276; ENST00000413479.5
Alternative gene names: ENSG00000227028.1; AC007254.3; OTTHUMG00000152308.2; ENSG00000227028.2; SLC8A1-AS1; ENSG00000227028.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.4417 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC8A1-AS1:39 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM178-2:6
4.0 SLC8A1-AS1:39
4.1 SLC8A1-AS1:39
5.0 SLC8A1-AS1:39
5.1 SLC8A1-AS1:39
5.2 SLC8A1-AS1:39