Transcript: SLC7A11-AS1:1

Basic information

LNCipedia transcript ID: SLC7A11-AS1:1 
HGNC Gene Symbol: SLC7A11-AS1    
HGNC Full Gene Name: SLC7A11 antisense RNA 1
Ensembl Gene ID: ENSG00000250033
Ensembl Transcript ID: ENST00000510066
Location (hg38): chr4:138057464-138098717
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 817 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510066.1; SLC7A11-AS1-002; OTTHUMT00000364383.1; NONHSAT098415; ENST00000510066.5
Alternative gene names: ENSG00000250033.1; SLC7A11-AS1; OTTHUMG00000161284.2; ENSG00000250033.5; ; ENST00000512786


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.0236 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC7A11-AS1:1 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCRN4L-4:1
4.0 SLC7A11-AS1:1
4.1 SLC7A11-AS1:1
5.0 SLC7A11-AS1:1
5.1 SLC7A11-AS1:1
5.2 SLC7A11-AS1:1

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