Transcript: SLC5A4-AS1:5

Basic information

LNCipedia transcript ID: SLC5A4-AS1:5 
HGNC Gene Symbol: SLC5A4-AS1    
HGNC Full Gene Name: SLC5A4 antisense RNA 1
Ensembl Gene ID: ENSG00000242082
Ensembl Transcript ID: ENST00000434942
Location (hg38): chr22:32205115-32269666
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 876 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434942.1; RP1-90G24.10-001; OTTHUMT00000315736.1; NONHSAT084950
Alternative gene names: ENSG00000242082.1; RP1-90G24.10; OTTHUMG00000150008.1; SLC5A4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.9438 non-coding 
CPAT coding probability 13.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC5A4-AS1:5 yes no no no

Available literature

  1. Ren (2016), A Tumor-Specific Prognostic Long Non-Coding RNA Signature in Gastric Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFPL3-3:1
4.0 lnc-RFPL3-3:1
4.1 lnc-RFPL3-3:1
5.0 lnc-RFPL3-3:1
5.1 SLC5A4-AS1:2
5.2 SLC5A4-AS1:5