Transcript: SLC25A25-AS1:9

Basic information

LNCipedia transcript ID: SLC25A25-AS1:9 
LNCipedia gene ID: SLC25A25-AS1
Location (hg38): chr9:128110534-128118678
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3254 bp
Exons: 6
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016871; NONHSAT134893
Alternative gene names: XLOC_007858; linc-NAIF1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.9423 non-coding 
CPAT coding probability 44.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLC25A25-AS1:9 no no no no

Available literature

  1. Li (2016), Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells., Tumour Biol.
  2. Xu (2014), [Expression of long non-coding RNA associated with radiotherapy-resistance in colorectal cancer cell lines with different radiosensitivity]., Zhonghua Wei Chang Wai Ke Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGES2-1:2
3.1 lnc-PTGES2-1:3
4.0 SLC25A25-AS1:9
4.1 SLC25A25-AS1:9
5.0 SLC25A25-AS1:9
5.1 SLC25A25-AS1:9
5.2 SLC25A25-AS1:9