Transcript: SLC25A25-AS1:11

Basic information

LNCipedia transcript ID: SLC25A25-AS1:11 
LNCipedia gene ID: SLC25A25-AS1
Location (hg38): chr9:128112881-128115289
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2022 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016480; NONHSAT134899
Alternative gene names: XLOC_007858; linc-NAIF1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.8843 non-coding 
CPAT coding probability 11.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC25A25-AS1:11 no no no no

Available literature

  1. Li (2016), Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells., Tumour Biol.
  2. Xu (2014), [Expression of long non-coding RNA associated with radiotherapy-resistance in colorectal cancer cell lines with different radiosensitivity]., Zhonghua Wei Chang Wai Ke Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGES2-1:4
3.1 lnc-PTGES2-1:5
4.0 SLC25A25-AS1:11
4.1 SLC25A25-AS1:11
5.0 SLC25A25-AS1:11
5.1 SLC25A25-AS1:11
5.2 SLC25A25-AS1:11