Transcript: SLC12A5-AS1:7

Basic information

LNCipedia transcript ID: SLC12A5-AS1:7 
HGNC Gene Symbol: SLC12A5-AS1    
HGNC Full Gene Name: SLC12A5 and MMP9 antisense RNA 1
Ensembl Gene ID: ENSG00000204044
Ensembl Transcript ID: ENST00000419897
Location (hg38): chr20:46020619-46021727
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 491 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419897.1; RP11-465L10.10-001; OTTHUMT00000079542.1; NONHSAT079996
Alternative gene names: ENSG00000204044.5; RP11-465L10.10; OTTHUMG00000032629.1; ENSG00000204044.6; SLC12A5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2757 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SLC12A5-AS1:7 yes no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NCOA5-1:2
4.0 lnc-NCOA5-1:2
4.1 lnc-NCOA5-1:2
5.0 lnc-NCOA5-1:2
5.1 SLC12A5-AS1:4
5.2 SLC12A5-AS1:7