Transcript: SLC12A5-AS1:6

Basic information

LNCipedia transcript ID: SLC12A5-AS1:6 
HGNC Gene Symbol: SLC12A5-AS1    
HGNC Full Gene Name: SLC12A5 and MMP9 antisense RNA 1
Ensembl Gene ID: ENSG00000204044
Ensembl Transcript ID: ENST00000535913
Location (hg38): chr20:46013500-46022073
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1957 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000535913.2
Alternative gene names: ENSG00000204044.6; RP11-465L10.10; SLC12A5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.8361 non-coding 
CPAT coding probability 39.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SLC12A5-AS1:6 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NCOA5-1:3
4.1 lnc-NCOA5-1:3
5.0 lnc-NCOA5-1:3
5.1 SLC12A5-AS1:3
5.2 SLC12A5-AS1:6