Transcript: SIX3-AS1:8

Basic information

LNCipedia transcript ID: SIX3-AS1:8 
HGNC Gene Symbol: SIX3-AS1    
HGNC Full Gene Name: SIX3 antisense RNA 1
Ensembl Gene ID: ENSG00000236502
Ensembl Transcript ID: ENST00000456467
Location (hg38): chr2:44940584-44941494
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 557 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003272; ENST00000456467.1; SIX3-AS1-002; OTTHUMT00000326191.1
Alternative gene names: XLOC_002076; linc-PREPL-2; ENSG00000236502.1; SIX3-AS1; OTTHUMG00000152423.1; ; SIX3OS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.0094 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIX3-AS1:8 no no no no

Available literature

  1. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIX2-2:2
3.1 lnc-SIX2-2:2
4.0 SIX3-AS1:8
4.1 SIX3-AS1:8
5.0 SIX3-AS1:8
5.1 SIX3-AS1:8
5.2 SIX3-AS1:8