Transcript: SIX3-AS1:3

Basic information

LNCipedia transcript ID: SIX3-AS1:3 
LNCipedia gene ID: SIX3-AS1
Location (hg38): chr2:44941920-44942597
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 678 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT070439
Alternative gene names: ; SIX3OS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.6378 non-coding 
CPAT coding probability 81.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SIX3-AS1:3 yes no no no

Available literature

  1. Alfano (2005), Natural antisense transcripts associated with genes involved in eye development., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIX2-2:5
4.0 SIX3-AS1:3
4.1 SIX3-AS1:3
5.0 SIX3-AS1:3
5.1 SIX3-AS1:3
5.2 SIX3-AS1:3