Transcript: SGO1-AS1:4

Basic information

LNCipedia transcript ID: SGO1-AS1:4 
HGNC Gene Symbol: SGO1-AS1    
HGNC Full Gene Name: SGO1 antisense RNA 1
Ensembl Gene ID: ENSG00000231304
Ensembl Transcript ID: ENST00000634618
Location (hg38): chr3:20186355-20878835
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2371 bp
Exons: 17
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634618.1
Alternative gene names: ENSG00000231304.2; SGOL1-AS1; ; SGO1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.2142 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGO1-AS1:4 no no no no

Available literature

  1. Li (2015), Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SGO1-AS1:4
4.1 SGO1-AS1:4
5.0 SGO1-AS1:4
5.1 SGO1-AS1:4
5.2 SGO1-AS1:4