Transcript: SGO1-AS1:12

Basic information

LNCipedia transcript ID: SGO1-AS1:12 
LNCipedia gene ID: SGO1-AS1
Location (hg38): chr3:20186415-20208476
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 466 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237485.1|ENCT00000286301.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.4957 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGO1-AS1:12 no no no no

Available literature

  1. Li (2015), Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SGO1-AS1:12
5.0 SGO1-AS1:12
5.1 SGO1-AS1:12
5.2 SGO1-AS1:12