Transcript: SGMS1-AS1:3

Basic information

LNCipedia transcript ID: SGMS1-AS1:3 
LNCipedia gene ID: SGMS1-AS1
RefSeq ID: NR_126411
Location (hg38): chr10:50624951-50631636
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2585 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126411; NR_126411.1
Alternative gene names: ; SGMS1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.954 non-coding 
CPAT coding probability 7.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SGMS1-AS1:3 no no no no

Available literature

  1. Lin (2014), Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs., Transl Neurodegener


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASAH2B-2:6
4.0 SGMS1-AS1:3
4.1 SGMS1-AS1:3
5.0 SGMS1-AS1:3
5.1 SGMS1-AS1:3
5.2 SGMS1-AS1:3