Transcript: SEMA3F-AS1:1

Basic information

LNCipedia transcript ID: SEMA3F-AS1:1 
HGNC Gene Symbol: SEMA3F-AS1    
HGNC Full Gene Name: SEMA3F antisense RNA 1
Ensembl Gene ID: ENSG00000235016
Ensembl Transcript ID: ENST00000437204
RefSeq ID: NR_135301
Location (hg38): chr3:50116022-50156085
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2755 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000437204.1; RP11-493K19.3-001; OTTHUMT00000345841.1; NONHSAT089786; NR_135301.1
Alternative gene names: ENSG00000235016.1; RP11-493K19.3; OTTHUMG00000156795.1; SEMA3F-AS1; RBM5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.4456 non-coding 
CPAT coding probability 11.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEMA3F-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFRD2-2:1
4.0 SEMA3F-AS1:1
4.1 SEMA3F-AS1:1
5.0 SEMA3F-AS1:1
5.1 SEMA3F-AS1:1
5.2 SEMA3F-AS1:1