Transcript: SEMA3B-AS1:5

Basic information

LNCipedia transcript ID: SEMA3B-AS1:5 
LNCipedia gene ID: SEMA3B-AS1
Location (hg38): chr3:50264683-50271526
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2752 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232352.1|MICT00000242850.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -103.7354 non-coding 
CPAT coding probability 13.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEMA3B-AS1:5 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SEMA3B-AS1:5
5.0 SEMA3B-AS1:5
5.1 SEMA3B-AS1:5
5.2 SEMA3B-AS1:5