Transcript: SEMA3B-AS1:1

Basic information

LNCipedia transcript ID: SEMA3B-AS1:1 
LNCipedia gene ID: SEMA3B-AS1
Location (hg38): chr3:50266683-50267515
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 252 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00006510
Alternative gene names: XLOC_003123; linc-MON1A-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -215.4951 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEMA3B-AS1:1 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFRD2-1:1
3.1 lnc-IFRD2-1:1
4.0 SEMA3B-AS1:1
4.1 SEMA3B-AS1:1
5.0 SEMA3B-AS1:1
5.1 SEMA3B-AS1:1
5.2 SEMA3B-AS1:1