Transcript: SEC24B-AS1:4

Basic information

LNCipedia transcript ID: SEC24B-AS1:4 
LNCipedia gene ID: SEC24B-AS1
Location (hg38): chr4:109430682-109432106
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 315 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT097782
Alternative gene names: 1/2-SBSRNA4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.4731 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEC24B-AS1:4 no no no no

Available literature

  1. Gong (2011), lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL25A1-1:5
4.0 SEC24B-AS1:4
4.1 SEC24B-AS1:4
5.0 SEC24B-AS1:4
5.1 SEC24B-AS1:4
5.2 SEC24B-AS1:4