Transcript: SEC24B-AS1:10

Basic information

LNCipedia transcript ID: SEC24B-AS1:10 
LNCipedia gene ID: SEC24B-AS1
Location (hg38): chr4:109410253-109433787
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 20801 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247950.2|ENCT00000334688.1
Alternative gene names: 1/2-SBSRNA4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.9356 non-coding 
CPAT coding probability 4.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEC24B-AS1:10 yes no no no

Available literature

  1. Gong (2011), lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SEC24B-AS1:10
5.0 SEC24B-AS1:10
5.1 SEC24B-AS1:10
5.2 SEC24B-AS1:10