Transcript: SDCBP2-AS1:4

Basic information

LNCipedia transcript ID: SDCBP2-AS1:4 
LNCipedia gene ID: SDCBP2-AS1
RefSeq ID: NR_040047
Location (hg38): chr20:1325343-1378735
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2479 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT078101; NR_040047; NR_040047.1
Alternative gene names: ; SDCBP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -24.6861 non-coding 
CPAT coding probability 8.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SDCBP2-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNPH-2:5
4.0 SDCBP2-AS1:4
4.1 SDCBP2-AS1:4
5.0 SDCBP2-AS1:4
5.1 SDCBP2-AS1:4
5.2 SDCBP2-AS1:4