Transcript: SCHLAP1:10

Basic information

LNCipedia transcript ID: SCHLAP1:10 
LNCipedia gene ID: SCHLAP1
Location (hg38): chr2:180823111-180826737
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3377 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_17774_transcript_12
Alternative gene names: SChLAP1; PCAT11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.4928 non-coding 
CPAT coding probability 13.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCHLAP1:10 no no no no

Available literature

  1. Lee (2013), Linking the SWI/SNF complex to prostate cancer., Nat. Genet.
  2. Prensner (2013), The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2E3-2:10
4.0 SCHLAP1:10
4.1 SCHLAP1:10
5.0 SCHLAP1:10
5.1 SCHLAP1:10
5.2 SCHLAP1:10