Transcript: SCEL-AS1:5

Basic information

LNCipedia transcript ID: SCEL-AS1:5 
LNCipedia gene ID: SCEL-AS1
Location (hg38): chr13:77599797-77606516
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 493 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000456280.1; SCEL-AS1-001; OTTHUMT00000045336.1; NONHSAT034417
Alternative gene names: ENSG00000224347.1; SCEL-AS1; OTTHUMG00000017106.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -284.5932 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCEL-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYCBP2-1:2
4.0 SCEL-AS1:5
4.1 SCEL-AS1:5
5.0 SCEL-AS1:5
5.1 SCEL-AS1:5
5.2 SCEL-AS1:5