Transcript: SATB2-AS1:8

Basic information

LNCipedia transcript ID: SATB2-AS1:8 
HGNC Gene Symbol: SATB2-AS1    
HGNC Full Gene Name: SATB2 antisense RNA 1
Ensembl Gene ID: ENSG00000225953
Ensembl Transcript ID: ENST00000416200
Location (hg38): chr2:199469896-199476935
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3197 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416200; ENST00000416200.1; AC017096.1-002; OTTHUMT00000335368.1; NONHSAT076258
Alternative gene names: ENSG00000225953; AC017096.1; ENSG00000225953.2; OTTHUMG00000154470.1; SATB2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.5603 non-coding 
CPAT coding probability 42.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SATB2-AS1:8 no no no no

Available literature

  1. Liu (2017), A novel antisense long non-coding RNA SATB2-AS1 overexpresses in osteosarcoma and increases cell proliferation and growth., Mol. Cell. Biochem.
  2. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  3. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf69-3:5
3.1 lnc-C2orf69-3:5
4.0 SATB2-AS1:8
4.1 SATB2-AS1:8
5.0 SATB2-AS1:8
5.1 SATB2-AS1:8
5.2 SATB2-AS1:8