Transcript: SATB1-AS1:93

Basic information

LNCipedia transcript ID: SATB1-AS1:93 
LNCipedia gene ID: SATB1-AS1
Location (hg38): chr3:18445261-18469702
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1095 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228956.4|ENST00000598149.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.9014 non-coding 
CPAT coding probability 7.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:93 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SATB1-AS1:93
5.0 SATB1-AS1:93
5.1 SATB1-AS1:93
5.2 SATB1-AS1:93