Transcript: SATB1-AS1:89

Basic information

LNCipedia transcript ID: SATB1-AS1:89 
HGNC Gene Symbol: SATB1-AS1    
HGNC Full Gene Name: SATB1 antisense RNA 1
Ensembl Gene ID: ENSG00000228956
Ensembl Transcript ID: ENST00000453361
Location (hg38): chr3:18745744-18747491
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 726 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005497; ENST00000453361; ENST00000453361.1; AC105750.1-003; OTTHUMT00000339555.1; NONHSAT088591
Alternative gene names: XLOC_002593; linc-KCNH8-1; ENSG00000233386; AC105750.1; ENSG00000233386.2; OTTHUMG00000155347.2; ENSG00000228956.4; AC144521.1; ENSG00000228956.8; SATB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -233.2919 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:89 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNH8-1:2
3.1 lnc-KCNH8-1:2
4.0 SATB1-AS1:89
4.1 SATB1-AS1:89
5.0 SATB1-AS1:89
5.1 SATB1-AS1:89
5.2 SATB1-AS1:89