Transcript: SATB1-AS1:87

Basic information

LNCipedia transcript ID: SATB1-AS1:87 
LNCipedia gene ID: SATB1-AS1
Location (hg38): chr3:18585415-18586903
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 205 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005961; NONHSAT088589
Alternative gene names: XLOC_002592; linc-KCNH8-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.6183 non-coding 
CPAT coding probability 10.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:87 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNH8-2:1
3.1 lnc-KCNH8-2:1
4.0 SATB1-AS1:87
4.1 SATB1-AS1:87
5.0 SATB1-AS1:87
5.1 SATB1-AS1:87
5.2 SATB1-AS1:87