Transcript: SATB1-AS1:40

Basic information

LNCipedia transcript ID: SATB1-AS1:40 
HGNC Gene Symbol: SATB1-AS1    
HGNC Full Gene Name: SATB1 antisense RNA 1
Ensembl Gene ID: ENSG00000228956
Ensembl Transcript ID: ENST00000596307
Location (hg38): chr3:18465983-18591966
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 878 bp
Exons: 6
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000596307.5
Alternative gene names: ENSG00000228956.8; SATB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.9014 non-coding 
CPAT coding probability 12.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:40 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SATB1-AS1:40
4.1 SATB1-AS1:40
5.0 SATB1-AS1:40
5.1 SATB1-AS1:40
5.2 SATB1-AS1:40