Transcript: SATB1-AS1:3

Basic information

LNCipedia transcript ID: SATB1-AS1:3 
HGNC Gene Symbol: SATB1-AS1    
HGNC Full Gene Name: SATB1 antisense RNA 1
Ensembl Gene ID: ENSG00000228956
Ensembl Transcript ID: ENST00000414198
Location (hg38): chr3:18445024-18526508
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 737 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414198; ENST00000414198.1; AC144521.1-001; OTTHUMT00000339550.1; NONHSAT088564; ENST00000414198.5
Alternative gene names: ENSG00000228956; AC144521.1; ENSG00000228956.2; OTTHUMG00000155346.2; ENSG00000228956.4; ENSG00000228956.8; SATB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.9014 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNH8-3:1
3.1 lnc-KCNH8-3:1
4.0 SATB1-AS1:3
4.1 SATB1-AS1:3
5.0 SATB1-AS1:3
5.1 SATB1-AS1:3
5.2 SATB1-AS1:3