Transcript: SAMMSON:43

Basic information

LNCipedia transcript ID: SAMMSON:43 
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:70167806-70172562
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 995 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006086; NONHSAT090378
Alternative gene names: XLOC_002697; linc-GPR27-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.7139 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:43 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MITF-3:1
3.1 lnc-MITF-3:1
4.0 lnc-MITF-3:1
4.1 lnc-MITF-3:1
5.0 lnc-MITF-3:1
5.1 SAMMSON:40
5.2 SAMMSON:43