Transcript: SAMMSON:4

Basic information

LNCipedia transcript ID: SAMMSON:4 
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:69999744-70015300
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2026 bp
Exons: 4
Sources: Refseq - Dec 2014
Alternative transcript names: NR_110000
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.2547 non-coding 
CPAT coding probability 20.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:4 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MITF-1:4
4.0 SAMMSON:4
4.1 SAMMSON:4
5.0 SAMMSON:4
5.1 SAMMSON:4
5.2 SAMMSON:4