Transcript: SAMD12-AS1:7

Basic information

LNCipedia transcript ID: SAMD12-AS1:7 
HGNC Gene Symbol: SAMD12-AS1    
HGNC Full Gene Name: SAMD12 antisense RNA 1
Ensembl Gene ID: ENSG00000281641
Ensembl Transcript ID: ENST00000625758
Location (hg38): chr8:118621001-118764285
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 718 bp
Exons: 6
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625758.2
Alternative gene names: ENSG00000281641.2; SAMD12-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -119.7572 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMD12-AS1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-COLEC10-4:2
4.1 lnc-COLEC10-4:2
5.0 lnc-COLEC10-4:2
5.1 SAMD12-AS1:3
5.2 SAMD12-AS1:7