Transcript: SALRNA2:3

Basic information

LNCipedia transcript ID: SALRNA2:3 
HGNC Gene Symbol: SALRNA2    
HGNC Full Gene Name: senescence associated long non-coding RNA 2
Ensembl Gene ID: ENSG00000280515
Ensembl Transcript ID: ENST00000629082
RefSeq ID: NR_126482
Location (hg38): chr15:70635249-70637314
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2066 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126482; ENST00000629082.1; NR_126482.1
Alternative gene names: ENSG00000280515.1; SALRNA2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -72.1883 non-coding 
CPAT coding probability 12.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SALRNA2:3 no no no no

Available literature

  1. Abdelmohsen (2013), Senescence-associated lncRNAs: senescence-associated long noncoding RNAs., Aging Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC49-13:1
4.0 lnc-LRRC49-13:1
4.1 lnc-LRRC49-13:1
5.0 lnc-LRRC49-13:1
5.1 SALRNA2:2
5.2 SALRNA2:3