Transcript: RUSC1-AS1:3

Basic information

LNCipedia transcript ID: RUSC1-AS1:3 
LNCipedia gene ID: RUSC1-AS1
Location (hg38): chr1:155320831-155322413
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1036 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT006729
Alternative gene names: FLJ35976


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.4567 non-coding 
CPAT coding probability 85.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RUSC1-AS1:3 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASH1L-1:5
4.0 RUSC1-AS1:3
4.1 RUSC1-AS1:3
5.0 RUSC1-AS1:3
5.1 RUSC1-AS1:3
5.2 RUSC1-AS1:3