Transcript: RUNX2-AS1:22

Basic information

LNCipedia transcript ID: RUNX2-AS1:22 
LNCipedia gene ID: RUNX2-AS1
Location (hg38): chr6:45555843-45576771
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1809 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012732; NONHSAT112982
Alternative gene names: XLOC_005737; linc-SUPT3H


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.2024 non-coding 
CPAT coding probability 3.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RUNX2-AS1:22 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SUPT3H-1:3
3.1 lnc-SUPT3H-1:3
4.0 lnc-SUPT3H-1:3
4.1 lnc-SUPT3H-1:3
5.0 lnc-SUPT3H-1:3
5.1 RUNX2-AS1:6
5.2 RUNX2-AS1:22