Transcript: RUNX2-AS1:18

Basic information

LNCipedia transcript ID: RUNX2-AS1:18 
LNCipedia gene ID: RUNX2-AS1
Location (hg38): chr6:45663235-45684749
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5589 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_3185_chr6:45630971-45652486_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 315.3229 coding 
CPAT coding probability 5.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RUNX2-AS1:18 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUPT3H-1:13
4.0 lnc-SUPT3H-1:13
4.1 lnc-SUPT3H-1:13
5.0 lnc-SUPT3H-1:13
5.1 RUNX2-AS1:2
5.2 RUNX2-AS1:18