Transcript: RTCA-AS1:3

Basic information

LNCipedia transcript ID: RTCA-AS1:3 
HGNC Gene Symbol: RTCA-AS1    
HGNC Full Gene Name: RTCA antisense RNA 1
Ensembl Gene ID: ENSG00000224616
Ensembl Transcript ID: ENST00000421185
Location (hg38): chr1:100264009-100266120
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 423 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000587; ENST00000421185.1; RP11-305E17.6-001; OTTHUMT00000097434.1; NONHSAT004784
Alternative gene names: XLOC_000939; linc-DBT-3; ENSG00000224616.1; RP11-305E17.6; OTTHUMG00000040490.1; RTCA-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.2173 non-coding 
CPAT coding probability 3.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RTCA-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DBT-1:1
3.1 lnc-DBT-1:1
4.0 RTCA-AS1:3
4.1 RTCA-AS1:3
5.0 RTCA-AS1:3
5.1 RTCA-AS1:3
5.2 RTCA-AS1:3