Transcript: RPS6KA2-AS1:1

Basic information

LNCipedia transcript ID: RPS6KA2-AS1:1 
LNCipedia gene ID: RPS6KA2-AS1
Location (hg38): chr6:166899906-166905026
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4555 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012016; NONHSAT116056
Alternative gene names: XLOC_005539; linc-FGFR1OP-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.5519 non-coding 
CPAT coding probability 20.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RPS6KA2-AS1:1 no no no no

Available literature

  1. Monti (2009), In silico prediction and experimental validation of natural antisense transcripts in two cancer-associated regions of human chromosome 6., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFR1OP-1:1
3.1 lnc-FGFR1OP-1:1
4.0 RPS6KA2-AS1:1
4.1 RPS6KA2-AS1:1
5.0 RPS6KA2-AS1:1
5.1 RPS6KA2-AS1:1
5.2 RPS6KA2-AS1:1