Transcript: RORA-AS1:14

Basic information

LNCipedia transcript ID: RORA-AS1:14 
LNCipedia gene ID: RORA-AS1
Ensembl Gene ID: ENSG00000259274
Ensembl Transcript ID: ENST00000560280
Location (hg38): chr15:60529973-60545159
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 434 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560280.1; CTD-2501E16.2-001; OTTHUMT00000416852.1; NONHSAT044224
Alternative gene names: ENSG00000259274.1; CTD-2501E16.2; OTTHUMG00000172104.1; ; AC107241.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -350.134 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RORA-AS1:14 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXB1-3:8
4.0 RORA-AS1:14
4.1 RORA-AS1:14
5.0 RORA-AS1:14
5.1 RORA-AS1:14
5.2 RORA-AS1:14