Transcript: RNF217-AS1:4

Basic information

LNCipedia transcript ID: RNF217-AS1:4 
LNCipedia gene ID: RNF217-AS1
Location (hg38): chr6:124935013-124941514
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 230 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT114781; FPKM1_group_28343_transcript_1
Alternative gene names: STL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.3085 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNF217-AS1:4 no no no no

Available literature

  1. Suto (1997), A t(6;12)(q23;p13) results in the fusion of ETV6 to a novel gene, STL, in a B-cell ALL cell line., Genes Chromosomes Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDDC2-4:4
4.0 RNF217-AS1:4
4.1 RNF217-AS1:4
5.0 RNF217-AS1:4
5.1 RNF217-AS1:4
5.2 RNF217-AS1:4